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Petrova V, Andrejic D, Finkenrath T, Grewer J, Zurbriggen M D, Urquiza-García, U. (2025). Gearing up Golden Braid assembly for plant synthetic genomics with RepTiles. bioRxiv. doi.org/10.1101/2025.02.28.640145

Trimborn L, Kuttig F, Ponnu J, Yu P, Korsching KR, Lederer P, Urquiza-García U, Matias D. Zurbriggen, Ute Hoecker (2025) Cryptochrome 1 promotes photomorphogensis in Arabidopsis by displacing substrates from the COP1 ubiquitin ligase. The plant Journal pubmed.ncbi.nlm.nih.gov/40052249/

Urquiza-García, U., Molina, N., Halliday, K. J., & Millar, A. J. (2025). Abundant clock proteins point to missing molecular regulation in the plant circadian clock (p. 2024.09.03.609973). bioRxiv. https://doi.org/10.1101/2024.09.03.609973, peer reviewed by Review Commons eeb.embo.org/doi/10.1101/2024.09.03.609973, Molecular Systems Biology https://doi.org/10.1038/s44320-025-00086-5 

Wagner, C., Urquiza-Garcia, U., Zurbriggen, M. D., & Beyer, H. M. (2024). GMOCU: Digital Documentation, Management, and Biological Risk Assessment of Genetic Parts. Advanced Biology, 8(4), 2300529. https://doi.org/10.1002/adbi.202300529

Urquiza-Garcia, U., & Zurbriggen, M. D. (2021). Biofortifying green optogenetics. Nature Plants, 7(2), 104–105. https://doi.org/10.1038/s41477-021-00860-x

Urquiza-García, U., & Millar, A. J. (2021). Testing the inferred transcription rates of a dynamic, gene network model in absolute units. In Silico Plants, 3(2), diab022. https://doi.org/10.1093/insilicoplants/diab022

Urquiza-García, U., & Millar, A. J. (2019). Expanding the bioluminescent reporter toolkit for plant science with NanoLUC. Plant Methods, 15(1), 68. https://doi.org/10.1186/s13007-019-0454-4

Urquiza-García, U., Zieliński, T., & Millar, A. J. (2019). Better research by efficient sharing: Evaluation of free management platforms for synthetic biology designs. Synthetic Biology, 4(1), ysz016. https://doi.org/10.1093/synbio/ysz016

Millar, A. J., Urquiza, U., Freeman, P. L., Hume, A., Plotkin, G. D., Sorokina, O., Zardilis, A., & Zielinski, T. (2019). Practical steps to digital organism models, from laboratory model species to ‘Crops in silico. Journal of Experimental Botany, 70(9), 2403–2418. https://doi.org/10.1093/jxb/ery435